STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK23980.1Lipocalin-like domain-containing protein. (159 aa)    
Predicted Functional Partners:
SHK23955.1
Outer membrane protein OmpA.
 
     0.891
SHK23925.1
Dehydrogenase (flavoprotein).
       0.557
SHJ79156.1
Hypothetical protein.
  
     0.546
SHJ46878.1
Hypothetical protein.
  
     0.538
SHK78683.1
Hypothetical protein.
  
     0.521
SHK23873.1
Predicted naringenin-chalcone synthase.
       0.519
SHK23896.1
Methyltransferase domain-containing protein.
       0.512
SHK24004.1
2-oxoisovalerate dehydrogenase E1 component.
       0.506
SHJ46810.1
Hypothetical protein.
  
     0.496
SHK23821.1
3-hydroxyacyl-[acyl-carrier-protein] dehydratase.
       0.479
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.