STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK40796.1L,D-transpeptidase catalytic domain. (317 aa)    
Predicted Functional Partners:
SHK38639.1
Hypothetical protein.
  
     0.740
SHK68680.1
Protein of unknown function, DUF481.
  
     0.651
SHK38602.1
Hypothetical protein.
  
     0.648
SHK45149.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
  
  
 0.641
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
    
  0.618
SHK40825.1
Hypothetical protein; Belongs to the LOG family.
       0.617
SHJ88384.1
Hypothetical protein.
  
     0.599
SHK34437.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
     
 0.586
SHK31558.1
GAF domain-containing protein.
  
     0.582
SHK40760.1
Hypothetical protein.
 
     0.578
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.