Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK42108.1 | SHK42236.1 | SAMN04488007_3035 | SAMN04488007_3040 | Aspartate kinase. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.405 |
SHK42108.1 | SHK42264.1 | SAMN04488007_3035 | SAMN04488007_3041 | Aspartate kinase. | 4a-hydroxytetrahydrobiopterin dehydratase. | 0.478 |
SHK42108.1 | SHK42286.1 | SAMN04488007_3035 | SAMN04488007_3042 | Aspartate kinase. | DNA-binding regulatory protein, YebC/PmpR family. | 0.590 |
SHK42108.1 | gcvT | SAMN04488007_3035 | SAMN04488007_3038 | Aspartate kinase. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.517 |
SHK42108.1 | glsA | SAMN04488007_3035 | SAMN04488007_3039 | Aspartate kinase. | L-glutaminase; Belongs to the glutaminase family. | 0.429 |
SHK42108.1 | metG | SAMN04488007_3035 | SAMN04488007_1108 | Aspartate kinase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.610 |
SHK42236.1 | SHK42108.1 | SAMN04488007_3040 | SAMN04488007_3035 | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | Aspartate kinase. | 0.405 |
SHK42236.1 | SHK42264.1 | SAMN04488007_3040 | SAMN04488007_3041 | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 4a-hydroxytetrahydrobiopterin dehydratase. | 0.801 |
SHK42236.1 | SHK42286.1 | SAMN04488007_3040 | SAMN04488007_3042 | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | DNA-binding regulatory protein, YebC/PmpR family. | 0.651 |
SHK42236.1 | gcvT | SAMN04488007_3040 | SAMN04488007_3038 | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.823 |
SHK42236.1 | glsA | SAMN04488007_3040 | SAMN04488007_3039 | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | L-glutaminase; Belongs to the glutaminase family. | 0.798 |
SHK42264.1 | SHK42108.1 | SAMN04488007_3041 | SAMN04488007_3035 | 4a-hydroxytetrahydrobiopterin dehydratase. | Aspartate kinase. | 0.478 |
SHK42264.1 | SHK42236.1 | SAMN04488007_3041 | SAMN04488007_3040 | 4a-hydroxytetrahydrobiopterin dehydratase. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.801 |
SHK42264.1 | SHK42286.1 | SAMN04488007_3041 | SAMN04488007_3042 | 4a-hydroxytetrahydrobiopterin dehydratase. | DNA-binding regulatory protein, YebC/PmpR family. | 0.580 |
SHK42264.1 | gcvT | SAMN04488007_3041 | SAMN04488007_3038 | 4a-hydroxytetrahydrobiopterin dehydratase. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.797 |
SHK42264.1 | glsA | SAMN04488007_3041 | SAMN04488007_3039 | 4a-hydroxytetrahydrobiopterin dehydratase. | L-glutaminase; Belongs to the glutaminase family. | 0.821 |
SHK42286.1 | SHK42108.1 | SAMN04488007_3042 | SAMN04488007_3035 | DNA-binding regulatory protein, YebC/PmpR family. | Aspartate kinase. | 0.590 |
SHK42286.1 | SHK42236.1 | SAMN04488007_3042 | SAMN04488007_3040 | DNA-binding regulatory protein, YebC/PmpR family. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.651 |
SHK42286.1 | SHK42264.1 | SAMN04488007_3042 | SAMN04488007_3041 | DNA-binding regulatory protein, YebC/PmpR family. | 4a-hydroxytetrahydrobiopterin dehydratase. | 0.580 |
SHK42286.1 | aspS | SAMN04488007_3042 | SAMN04488007_1000 | DNA-binding regulatory protein, YebC/PmpR family. | aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.546 |
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