STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK43035.1Hypothetical protein. (110 aa)    
Predicted Functional Partners:
SHK43102.1
Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase.
 
     0.845
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
       0.823
SHJ74869.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.773
SHK29309.1
CarboxypepD_reg-like domain-containing protein.
  
     0.770
SHK46690.1
Protein of unknown function.
  
     0.766
SHK61643.1
Hypothetical protein.
  
     0.764
SHJ51225.1
Putative DNA-binding domain-containing protein.
  
     0.760
SHJ82883.1
Hypothetical protein.
  
     0.759
SHK62661.1
Putative MetA-pathway of phenol degradation.
  
     0.758
SHJ52062.1
Hypothetical protein.
  
     0.752
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.