Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SHK55732.1Peptidase family M23. (563 aa)    
Predicted Functional Partners:
SHK55658.1
Hypothetical protein.
 
     0.824
SHK55695.1
TonB-dependent Receptor Plug Domain.
       0.819
SHJ58522.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
     0.707
SHJ49467.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
     0.658
SHK55753.1
Hypothetical protein.
       0.577
SHK55788.1
Cell division protein ZapA.
       0.574
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.559
SHK58361.1
Family of unknown function.
  
     0.521
SHK56794.1
Protein involved in gliding motility GldI.
  
     0.503
SHK83230.1
Surface antigen.
  
     0.466
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
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