STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyRibonucrease Y; Endoribonuclease that initiates mRNA decay. (522 aa)    
Predicted Functional Partners:
SHJ60779.1
PSP1 C-terminal conserved region.
 
    0.733
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.604
SHK74090.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
 
     0.547
SHK55788.1
Cell division protein ZapA.
       0.539
SHK56821.1
Phosphoesterase RecJ domain-containing protein.
 
   
 0.504
SHK55753.1
Hypothetical protein.
       0.483
SHK18292.1
Chemotaxis protein MotB.
    
   0.452
SHK67209.1
Hypothetical protein.
    
   0.452
SHK67389.1
Chemotaxis protein MotB.
    
   0.452
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.