Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK24540.1 | SHK57105.1 | SAMN04488007_2511 | SAMN04488007_3252 | Rhomboid family protein. | Membrane associated serine protease, rhomboid family. | 0.688 |
SHK24540.1 | SHK58560.1 | SAMN04488007_2511 | SAMN04488007_3298 | Rhomboid family protein. | N-acetylmuramoyl-L-alanine amidase. | 0.533 |
SHK24540.1 | tatA | SAMN04488007_2511 | SAMN04488007_0790 | Rhomboid family protein. | Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.565 |
SHK24540.1 | tatA-2 | SAMN04488007_2511 | SAMN04488007_3827 | Rhomboid family protein. | Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.565 |
SHK56989.1 | SHK57041.1 | SAMN04488007_3248 | SAMN04488007_3250 | Tetratricopeptide repeat-containing protein. | Hypothetical protein. | 0.684 |
SHK56989.1 | SHK57105.1 | SAMN04488007_3248 | SAMN04488007_3252 | Tetratricopeptide repeat-containing protein. | Membrane associated serine protease, rhomboid family. | 0.687 |
SHK56989.1 | SHK57131.1 | SAMN04488007_3248 | SAMN04488007_3253 | Tetratricopeptide repeat-containing protein. | Membrane associated serine protease, rhomboid family. | 0.714 |
SHK56989.1 | SHK57163.1 | SAMN04488007_3248 | SAMN04488007_3254 | Tetratricopeptide repeat-containing protein. | Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. | 0.774 |
SHK56989.1 | mutL | SAMN04488007_3248 | SAMN04488007_3251 | Tetratricopeptide repeat-containing protein. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.635 |
SHK56989.1 | ribH | SAMN04488007_3248 | SAMN04488007_3249 | Tetratricopeptide repeat-containing protein. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.832 |
SHK57041.1 | SHK56989.1 | SAMN04488007_3250 | SAMN04488007_3248 | Hypothetical protein. | Tetratricopeptide repeat-containing protein. | 0.684 |
SHK57041.1 | SHK57105.1 | SAMN04488007_3250 | SAMN04488007_3252 | Hypothetical protein. | Membrane associated serine protease, rhomboid family. | 0.823 |
SHK57041.1 | SHK57131.1 | SAMN04488007_3250 | SAMN04488007_3253 | Hypothetical protein. | Membrane associated serine protease, rhomboid family. | 0.823 |
SHK57041.1 | SHK57163.1 | SAMN04488007_3250 | SAMN04488007_3254 | Hypothetical protein. | Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. | 0.737 |
SHK57041.1 | mutL | SAMN04488007_3250 | SAMN04488007_3251 | Hypothetical protein. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.823 |
SHK57041.1 | ribH | SAMN04488007_3250 | SAMN04488007_3249 | Hypothetical protein. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.918 |
SHK57105.1 | SHK24540.1 | SAMN04488007_3252 | SAMN04488007_2511 | Membrane associated serine protease, rhomboid family. | Rhomboid family protein. | 0.688 |
SHK57105.1 | SHK56989.1 | SAMN04488007_3252 | SAMN04488007_3248 | Membrane associated serine protease, rhomboid family. | Tetratricopeptide repeat-containing protein. | 0.687 |
SHK57105.1 | SHK57041.1 | SAMN04488007_3252 | SAMN04488007_3250 | Membrane associated serine protease, rhomboid family. | Hypothetical protein. | 0.823 |
SHK57105.1 | SHK57131.1 | SAMN04488007_3252 | SAMN04488007_3253 | Membrane associated serine protease, rhomboid family. | Membrane associated serine protease, rhomboid family. | 0.858 |
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