Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJ36135.1 | SHK64328.1 | SAMN04488007_0089 | SAMN04488007_3490 | Hypothetical protein. | Protein of unknown function. | 0.848 |
SHJ36135.1 | SHK78717.1 | SAMN04488007_0089 | SAMN04488007_3825 | Hypothetical protein. | Hypothetical protein. | 0.500 |
SHJ36135.1 | dnaA | SAMN04488007_0089 | SAMN04488007_2605 | Hypothetical protein. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.500 |
SHJ75984.1 | SHK64328.1 | SAMN04488007_1335 | SAMN04488007_3490 | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | Protein of unknown function. | 0.548 |
SHK41045.1 | SHK64328.1 | SAMN04488007_2996 | SAMN04488007_3490 | Ribonucleoside-diphosphate reductase beta chain. | Protein of unknown function. | 0.687 |
SHK64300.1 | SHK64328.1 | SAMN04488007_3489 | SAMN04488007_3490 | Hypothetical protein. | Protein of unknown function. | 0.970 |
SHK64328.1 | SHJ36135.1 | SAMN04488007_3490 | SAMN04488007_0089 | Protein of unknown function. | Hypothetical protein. | 0.848 |
SHK64328.1 | SHJ75984.1 | SAMN04488007_3490 | SAMN04488007_1335 | Protein of unknown function. | Quinol:cytochrome c oxidoreductase quinone-binding subunit 2. | 0.548 |
SHK64328.1 | SHK41045.1 | SAMN04488007_3490 | SAMN04488007_2996 | Protein of unknown function. | Ribonucleoside-diphosphate reductase beta chain. | 0.687 |
SHK64328.1 | SHK64300.1 | SAMN04488007_3490 | SAMN04488007_3489 | Protein of unknown function. | Hypothetical protein. | 0.970 |
SHK64328.1 | SHK64364.1 | SAMN04488007_3490 | SAMN04488007_3491 | Protein of unknown function. | Hypothetical protein. | 0.737 |
SHK64328.1 | SHK78717.1 | SAMN04488007_3490 | SAMN04488007_3825 | Protein of unknown function. | Hypothetical protein. | 0.655 |
SHK64328.1 | dnaA | SAMN04488007_3490 | SAMN04488007_2605 | Protein of unknown function. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.655 |
SHK64328.1 | dnaG | SAMN04488007_3490 | SAMN04488007_3719 | Protein of unknown function. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | 0.860 |
SHK64328.1 | dnaX | SAMN04488007_3490 | SAMN04488007_3053 | Protein of unknown function. | DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.667 |
SHK64328.1 | tuf | SAMN04488007_3490 | SAMN04488007_3920 | Protein of unknown function. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.548 |
SHK64364.1 | SHK64328.1 | SAMN04488007_3491 | SAMN04488007_3490 | Hypothetical protein. | Protein of unknown function. | 0.737 |
SHK78717.1 | SHJ36135.1 | SAMN04488007_3825 | SAMN04488007_0089 | Hypothetical protein. | Hypothetical protein. | 0.500 |
SHK78717.1 | SHK64328.1 | SAMN04488007_3825 | SAMN04488007_3490 | Hypothetical protein. | Protein of unknown function. | 0.655 |
dnaA | SHJ36135.1 | SAMN04488007_2605 | SAMN04488007_0089 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Hypothetical protein. | 0.500 |
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