STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK73726.1Hypothetical protein. (360 aa)    
Predicted Functional Partners:
SHK73764.1
Hypothetical protein.
 
     0.905
SHK73795.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.693
SHJ89218.1
Hypothetical protein; Manually curated.
  
     0.648
SHK81636.1
Preprotein translocase subunit SecE; Belongs to the SecE/SEC61-gamma family.
  
     0.550
SHJ33966.1
Uncharacterized membrane protein YqaE, homolog of Blt101, UPF0057 family.
  
     0.542
SHJ88205.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
  0.541
SHK66814.1
Hypothetical protein.
  
     0.474
SHJ91767.1
Hypothetical protein.
  
     0.467
purN
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.457
SHJ73335.1
Hypothetical protein.
  
     0.437
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.