STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK76262.1Alginate lyase. (326 aa)    
Predicted Functional Partners:
SHJ37829.1
Alginate lyase.
 
  
  0.881
SHK76412.1
SusD family protein.
 
 
   0.876
SHK76451.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.840
SHK76367.1
Carbohydrate binding domain-containing protein.
 
     0.835
SHK76231.1
Transcriptional regulator, GntR family.
 
     0.805
SHK76293.1
Alginate lyase.
 
    
0.777
SHJ37739.1
poly(beta-D-mannuronate) lyase.
 
  
  0.731
SHK31070.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
   0.700
SHJ38024.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
 
     0.658
SHJ37787.1
poly(beta-D-mannuronate) lyase.
 
  
  0.637
Your Current Organism:
Maribacter aquivivus
NCBI taxonomy Id: 228958
Other names: Bacteroidetes bacterium KMM 3949, CCUG 48009, DSM 16478, KCTC 12968, KMM 3949, M. aquivivus, Maribacter aquivivus Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.