STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ04688.1ADP-heptose:LPS heptosyltransferase. (350 aa)    
Predicted Functional Partners:
SIQ04662.1
Protein of unknown function.
 
  
 0.958
SIQ21897.1
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
 0.900
SIQ63660.1
Dual specificity phosphatase, catalytic domain.
  
   0.810
lpxK
lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
 
 0.776
SIQ87025.1
4Fe-4S binding domain-containing protein.
  
   0.764
SIR16325.1
4Fe-4S dicluster domain-containing protein.
  
   0.764
SIQ61200.1
KDO2-lipid IV(A) lauroyltransferase.
 
  
 0.753
SIQ04632.1
Hypothetical protein.
 
     0.721
SIQ37735.1
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
   
   0.694
SIQ80741.1
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
   
   0.694
Your Current Organism:
Maribacter ulvicola
NCBI taxonomy Id: 228959
Other names: Bacteroidetes bacterium KMM 3951, DSM 15366, KCTC 12969, KMM 3951, M. ulvicola, Maribacter ulvicola Nedashkovskaya et al. 2004
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.