STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR08674.1Hypothetical protein. (355 aa)    
Predicted Functional Partners:
SIR08704.1
Hypothetical protein.
 
     0.904
SIR08736.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.670
SIR30033.1
Choline/glycine/proline betaine transport protein; Belongs to the BCCT transporter (TC 2.A.15) family.
    
 0.608
SIQ94070.1
Uncharacterized membrane protein YqaE, homolog of Blt101, UPF0057 family.
  
     0.528
SIR36926.1
Preprotein translocase subunit SecE; Belongs to the SecE/SEC61-gamma family.
  
     0.485
SIP99635.1
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase.
   
    0.467
SIQ18423.1
Hypothetical protein.
  
     0.465
SIQ39915.1
Hypothetical protein.
  
     0.449
SIR28573.1
Hypothetical protein.
  
     0.416
SIR08765.1
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.402
Your Current Organism:
Maribacter ulvicola
NCBI taxonomy Id: 228959
Other names: Bacteroidetes bacterium KMM 3951, DSM 15366, KCTC 12969, KMM 3951, M. ulvicola, Maribacter ulvicola Nedashkovskaya et al. 2004
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.