STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW72567.1N-acylneuraminate cytidylyltransferase. (386 aa)    
Predicted Functional Partners:
SDW72624.1
N-acetylneuraminate synthase.
 
 0.999
SDW73755.1
Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
 
 0.892
SDX21989.1
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase); Belongs to the KdsA family.
  
 0.835
SDW72673.1
Hypothetical protein.
 
     0.825
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase); Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
 
  
 0.825
SDW72772.1
Glycosyl transferase family 2.
 
     0.807
SDW72268.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing); Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.768
SDX41538.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase).
 
 
 
0.757
SDW72831.1
Glycosyltransferase, GT2 family.
 
     0.704
SDW72499.1
Hypothetical protein.
       0.655
Your Current Organism:
Flavobacterium degerlachei
NCBI taxonomy Id: 229203
Other names: DSM 15718, F. degerlachei, Flavobacterium degerlachei Van Trappen et al. 2004, LMG 21915, LMG:21915, NBRC 102677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.