STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF90592.1Iron complex outermembrane recepter protein. (997 aa)    
Predicted Functional Partners:
SHF90565.1
SusD family protein.
 
     0.946
SHF90540.1
Repeat domain-containing protein.
 
     0.841
SHF90514.1
Repeat domain-containing protein.
 
     0.837
SHG81630.1
RagB/SusD domain-containing protein.
  
 
   0.825
SHH15784.1
SusD family protein.
  
 
   0.824
SHG18011.1
Starch-binding associating with outer membrane.
  
 
   0.823
SHG83667.1
Starch-binding associating with outer membrane.
  
 
   0.771
SHF90485.1
PAP2 superfamily protein.
 
     0.763
SHG80785.1
SusD family protein.
  
 
   0.719
SHF87810.1
Outer membrane transport energization protein TonB.
  
  0.718
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.