STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF92834.1Glycosidase; Belongs to the glycosyl hydrolase 13 family. (625 aa)    
Predicted Functional Partners:
SHF93020.1
Por secretion system C-terminal sorting domain-containing protein; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.913
SHF92858.1
Maltose phosphorylase.
 
 
 0.851
SHH07753.1
Glycosyl-hydrolase 97 C-terminal, oligomerisation.
 
  
 0.841
SHF88332.1
Amino acid/polyamine/organocation transporter, APC superfamily.
   
  0.823
SHG49837.1
Amino acid/polyamine/organocation transporter, APC superfamily.
   
  0.823
SHG80461.1
Amino acid/polyamine/organocation transporter, APC superfamily.
   
  0.823
SHH00100.1
Amino acid/polyamine/organocation transporter, APC superfamily.
   
  0.823
SHH04668.1
Amino acid/polyamine/organocation transporter, APC superfamily.
   
  0.823
SHF92904.1
Maltose/moltooligosaccharide transporter.
 
    0.801
SHF92810.1
Alpha-amylase.
 
    
0.782
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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