Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHF94425.1 | SHF94449.1 | SAMN05444372_101271 | SAMN05444372_101272 | Hypothetical protein. | HopJ type III effector protein. | 0.454 |
SHF94425.1 | SHF94474.1 | SAMN05444372_101271 | SAMN05444372_101273 | Hypothetical protein. | Monoamine oxidase. | 0.446 |
SHF94425.1 | rsmI | SAMN05444372_101271 | SAMN05444372_101274 | Hypothetical protein. | 16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.446 |
SHF94449.1 | SHF94425.1 | SAMN05444372_101272 | SAMN05444372_101271 | HopJ type III effector protein. | Hypothetical protein. | 0.454 |
SHF94449.1 | SHF94474.1 | SAMN05444372_101272 | SAMN05444372_101273 | HopJ type III effector protein. | Monoamine oxidase. | 0.757 |
SHF94449.1 | SHF94525.1 | SAMN05444372_101272 | SAMN05444372_101275 | HopJ type III effector protein. | Hypothetical protein. | 0.651 |
SHF94449.1 | SHG76623.1 | SAMN05444372_101272 | SAMN05444372_109179 | HopJ type III effector protein. | Protein of unknown function. | 0.523 |
SHF94449.1 | rsmI | SAMN05444372_101272 | SAMN05444372_101274 | HopJ type III effector protein. | 16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.786 |
SHF94449.1 | tdk | SAMN05444372_101272 | SAMN05444372_101276 | HopJ type III effector protein. | Thymidine kinase. | 0.405 |
SHF94474.1 | SHF94425.1 | SAMN05444372_101273 | SAMN05444372_101271 | Monoamine oxidase. | Hypothetical protein. | 0.446 |
SHF94474.1 | SHF94449.1 | SAMN05444372_101273 | SAMN05444372_101272 | Monoamine oxidase. | HopJ type III effector protein. | 0.757 |
SHF94474.1 | SHF94525.1 | SAMN05444372_101273 | SAMN05444372_101275 | Monoamine oxidase. | Hypothetical protein. | 0.620 |
SHF94474.1 | rsmI | SAMN05444372_101273 | SAMN05444372_101274 | Monoamine oxidase. | 16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.773 |
SHF94474.1 | tdk | SAMN05444372_101273 | SAMN05444372_101276 | Monoamine oxidase. | Thymidine kinase. | 0.501 |
SHF94525.1 | SHF94449.1 | SAMN05444372_101275 | SAMN05444372_101272 | Hypothetical protein. | HopJ type III effector protein. | 0.651 |
SHF94525.1 | SHF94474.1 | SAMN05444372_101275 | SAMN05444372_101273 | Hypothetical protein. | Monoamine oxidase. | 0.620 |
SHF94525.1 | rsmI | SAMN05444372_101275 | SAMN05444372_101274 | Hypothetical protein. | 16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.714 |
SHF94525.1 | tdk | SAMN05444372_101275 | SAMN05444372_101276 | Hypothetical protein. | Thymidine kinase. | 0.600 |
SHG76623.1 | SHF94449.1 | SAMN05444372_109179 | SAMN05444372_101272 | Protein of unknown function. | HopJ type III effector protein. | 0.523 |
rsmI | SHF94425.1 | SAMN05444372_101274 | SAMN05444372_101271 | 16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | Hypothetical protein. | 0.446 |
page 1 of 2