STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF98291.1Hypothetical protein. (543 aa)    
Predicted Functional Partners:
SHF98262.1
Ca-activated chloride channel family protein.
 
     0.913
SHF98189.1
Oxygen tolerance.
 
     0.898
SHF98215.1
Tetratricopeptide repeat-containing protein.
 
     0.888
SHF98159.1
SH3 domain-containing protein.
 
     0.847
SHF98243.1
Ca-activated chloride channel family protein.
 
     0.845
SHF94980.1
Ig-like domain-containing protein.
  
     0.740
SHG91393.1
Surface antigen.
  
     0.738
SHG58438.1
Hypothetical protein.
  
     0.728
SHH10263.1
Family of unknown function.
  
     0.726
SHF98345.1
Protein of unknown function DUF58.
 
    0.724
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.