STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG07926.1Thioredoxin reductase (NADPH). (315 aa)    
Predicted Functional Partners:
SHG87500.1
Thioredoxin; Belongs to the thioredoxin family.
 
 0.984
SHG81164.1
Thioredoxin.
  
 0.940
SHG08417.1
Thioredoxin.
  
 0.907
SHH07026.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
  0.873
SHF88696.1
Thioredoxin reductase (NADPH).
  
  
 
0.858
SHG77211.1
Glutamate synthase (NADH) large subunit.
    
 0.856
SHG29486.1
Methionine-gamma-lyase.
   
 
 0.834
SHF91458.1
Thioredoxin 1.
  
 0.817
SHG58682.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 
 0.813
SHG20143.1
Bacillithiol system protein YtxJ.
   
 0.793
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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