STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG05727.1Ligand-binding SRPBCC domain-containing protein. (153 aa)    
Predicted Functional Partners:
SHG05502.1
Hypothetical protein.
     0.881
SHG05707.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
     0.867
SHG05755.1
Beta-carotene 3-hydroxylase.
 
     0.590
SHG05777.1
Phytoene/squalene synthetase.
 
     0.559
SHG05833.1
DNA-binding transcriptional regulator, MerR family.
 
     0.525
SHG05802.1
Phytoene desaturase.
 
     0.507
SHG05681.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
     0.415
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.