STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG20627.1Lipoprotein-releasing system ATP-binding protein. (226 aa)    
Predicted Functional Partners:
SHG87101.1
Putative ABC transport system permease protein.
  
 0.999
SHG20601.1
Lipoprotein-releasing system permease protein.
 
  0.997
SHG91228.1
Putative ABC transport system permease protein.
 
  0.975
SHG99345.1
Putative ABC transport system permease protein.
 
  0.974
SHG20575.1
RND family efflux transporter, MFP subunit.
 
  0.960
SHF87612.1
Lipoprotein-releasing system permease protein.
   
  0.956
SHF95627.1
Lipoprotein-releasing system permease protein.
   
  0.956
SHF89764.1
Putative ABC transport system permease protein.
 
  0.906
SHF89791.1
Putative ABC transport system permease protein.
 
  0.880
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
  
 
0.850
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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