STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG28677.1Cysteine desulfurase. (374 aa)    
Predicted Functional Partners:
SHG58682.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 0.971
SHG87189.1
Ferredoxin, 2Fe-2S.
  
 0.955
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
   
 0.918
SHF89596.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
 
 0.896
SHH07026.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
0.893
SHG87144.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
 
 0.889
SHF88894.1
Transcriptional regulator, BadM/Rrf2 family.
  
 
 0.859
SHG39918.1
Transcriptional regulator, BadM/Rrf2 family.
  
 
 0.859
SHG96539.1
Hydroxyacylglutathione hydrolase.
  
 0.793
SHG96578.1
Hypothetical protein.
  
 0.793
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.