STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG39466.1Hypothetical protein. (310 aa)    
Predicted Functional Partners:
SHG17441.1
PAS domain S-box-containing protein.
  
 
 0.951
SHG29429.1
PAS domain S-box-containing protein.
  
 
 0.871
SHG66845.1
2-oxoglutarate dehydrogenase E1 component.
    
 
 0.869
SHG22078.1
PAS domain S-box-containing protein.
  
 
 0.850
SHH13227.1
PASTA domain-containing protein.
   
 
 0.839
SHH18336.1
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 
 0.827
SHG55070.1
Gliding motility-associated C-terminal domain-containing protein.
    
  0.813
SHG77211.1
Glutamate synthase (NADH) large subunit.
    
   0.810
SHG43897.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
    
 
 0.771
SHG67022.1
2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
    
 
 0.771
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.