STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG41216.1Glycosyltransferase involved in cell wall bisynthesis. (389 aa)    
Predicted Functional Partners:
SHG41241.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.944
SHG41265.1
Hypothetical protein.
 
     0.941
SHG41290.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.935
SHG41312.1
Hypothetical protein.
 
     0.924
SHG41362.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
    0.907
SHG41194.1
Putative colanic acid biosynthesis acetyltransferase WcaF.
 
 
  0.813
SHG41336.1
Glycosyl transferase family 2.
  
 
  0.786
SHG41120.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
  0.745
SHH04371.1
Hypothetical protein.
 
 
 0.620
SHH15510.1
Bacillithiol biosynthesis deacetylase BshB1.
   
 
  0.606
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.