STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG41290.1Glycosyltransferase involved in cell wall bisynthesis. (414 aa)    
Predicted Functional Partners:
SHG41312.1
Hypothetical protein.
 
     0.949
SHG41265.1
Hypothetical protein.
 
     0.945
SHG41362.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.939
SHG41216.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.935
SHG41241.1
Glycosyltransferase involved in cell wall bisynthesis.
 
   
0.846
SHG41336.1
Glycosyl transferase family 2.
  
 
  0.799
SHG41194.1
Putative colanic acid biosynthesis acetyltransferase WcaF.
 
 
  0.709
SHG41120.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.636
SHH04371.1
Hypothetical protein.
  
 
 0.559
SHF93020.1
Por secretion system C-terminal sorting domain-containing protein; Belongs to the glycosyl hydrolase 13 family.
   
  0.544
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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