STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG66917.1Protein of unknown function. (78 aa)    
Predicted Functional Partners:
SHG66951.1
Hypothetical protein.
 
     0.843
SHG66984.1
Uncharacterized conserved protein, contains HEPN domain.
 
     0.821
SHG67022.1
2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
    
  0.816
SHG66882.1
Protein of unknown function.
  
    0.797
SHG66845.1
2-oxoglutarate dehydrogenase E1 component.
       0.598
SHH13166.1
Uncharacterized conserved protein, DUF433 family.
  
     0.547
SHG03594.1
Uncharacterized conserved protein, DUF433 family.
  
     0.478
SHG67053.1
Hypothetical protein.
       0.476
SHF95695.1
Uncharacterized conserved protein, DUF433 family.
  
     0.449
SHG66809.1
Hypothetical protein.
       0.439
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.