Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHF88999.1 | SHF89023.1 | SAMN05444372_10156 | SAMN05444372_10157 | Aspartate kinase. | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | 0.999 |
SHF88999.1 | SHG08115.1 | SAMN05444372_10156 | SAMN05444372_102185 | Aspartate kinase. | Dihydrodipicolinate reductase; Belongs to the DapB family. | 0.688 |
SHF88999.1 | SHG25355.1 | SAMN05444372_10156 | SAMN05444372_1042 | Aspartate kinase. | Aspartate kinase. | 0.989 |
SHF88999.1 | SHG89766.1 | SAMN05444372_10156 | SAMN05444372_111104 | Aspartate kinase. | Aspartate kinase; Belongs to the aspartokinase family. | 0.887 |
SHF88999.1 | asd | SAMN05444372_10156 | SAMN05444372_108168 | Aspartate kinase. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.988 |
SHF88999.1 | dapA | SAMN05444372_10156 | SAMN05444372_103117 | Aspartate kinase. | 4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.911 |
SHF88999.1 | dapF | SAMN05444372_10156 | SAMN05444372_112168 | Aspartate kinase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.662 |
SHF88999.1 | lysA | SAMN05444372_10156 | SAMN05444372_109195 | Aspartate kinase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.830 |
SHF88999.1 | murE | SAMN05444372_10156 | SAMN05444372_109102 | Aspartate kinase. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.544 |
SHF89023.1 | SHF88999.1 | SAMN05444372_10157 | SAMN05444372_10156 | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | Aspartate kinase. | 0.999 |
SHF89023.1 | SHG08115.1 | SAMN05444372_10157 | SAMN05444372_102185 | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | Dihydrodipicolinate reductase; Belongs to the DapB family. | 0.647 |
SHF89023.1 | SHG25355.1 | SAMN05444372_10157 | SAMN05444372_1042 | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | Aspartate kinase. | 0.996 |
SHF89023.1 | SHG89766.1 | SAMN05444372_10157 | SAMN05444372_111104 | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | Aspartate kinase; Belongs to the aspartokinase family. | 0.889 |
SHF89023.1 | asd | SAMN05444372_10157 | SAMN05444372_108168 | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.986 |
SHF89023.1 | dapA | SAMN05444372_10157 | SAMN05444372_103117 | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | 4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.911 |
SHF89023.1 | dapF | SAMN05444372_10157 | SAMN05444372_112168 | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.662 |
SHF89023.1 | lysA | SAMN05444372_10157 | SAMN05444372_109195 | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.771 |
SHF89023.1 | murE | SAMN05444372_10157 | SAMN05444372_109102 | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.544 |
SHG08115.1 | SHF88999.1 | SAMN05444372_102185 | SAMN05444372_10156 | Dihydrodipicolinate reductase; Belongs to the DapB family. | Aspartate kinase. | 0.688 |
SHG08115.1 | SHF89023.1 | SAMN05444372_102185 | SAMN05444372_10157 | Dihydrodipicolinate reductase; Belongs to the DapB family. | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | 0.647 |
page 1 of 5