STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG95214.1Hypothetical protein. (179 aa)    
Predicted Functional Partners:
SHH13487.1
Dihydrolipoamide dehydrogenase.
    
  0.737
SHH02742.1
Hypothetical protein.
  
     0.550
SHG95254.1
Protein of unknown function.
       0.549
SHG27589.1
Hypothetical protein.
  
     0.506
SHG12588.1
Protein of unknown function.
  
     0.464
SHG82936.1
Hypothetical protein.
  
     0.436
SHG83388.1
Hypothetical protein.
  
     0.417
SHG34656.1
Peptidase family M48.
    
  0.415
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.