STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG95878.1Formate/nitrite transporter FocA, FNT family. (282 aa)    
Predicted Functional Partners:
SHF94605.1
Carbonic anhydrase.
  
    0.552
SHG04530.1
Carbonic anhydrase.
  
    0.552
SHG25507.1
Carbonic anhydrase.
  
    0.552
SHH17914.1
Carbonic anhydrase.
  
    0.552
SHG71394.1
Lipid kinase, YegS/Rv2252/BmrU family.
  
  
 0.537
SHG71430.1
Uncharacterized conserved protein.
  
     0.509
SHG77211.1
Glutamate synthase (NADH) large subunit.
   
  
 0.479
SHG84729.1
Pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.457
SHF91931.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
  
  
 0.448
SHG95840.1
Protein of unknown function.
       0.433
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.