STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH13889.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
SHH13915.1
Hypothetical protein.
 
    0.789
SHG17441.1
PAS domain S-box-containing protein.
    
 0.684
SHH13942.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.672
SHG22078.1
PAS domain S-box-containing protein.
     
 0.671
SHG29429.1
PAS domain S-box-containing protein.
    
 0.618
SHG08217.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
  
     0.613
SHG71953.1
Lipopolysaccharide-assembly.
  
     0.606
SHG09347.1
Hypothetical protein.
  
     0.538
SHG08358.1
Tetratricopeptide repeat-containing protein.
  
     0.520
SHH10263.1
Family of unknown function.
  
     0.517
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.