STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH13915.1Hypothetical protein. (137 aa)    
Predicted Functional Partners:
SHH13889.1
Hypothetical protein.
 
    0.789
SHH13942.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.743
SHH13971.1
Polyketide cyclase / dehydrase and lipid transport.
 
     0.662
SHH03408.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.649
SHG88542.1
Protein of unknown function.
  
     0.648
SHH13999.1
Hypothetical protein.
 
     0.608
SHG89223.1
Hypothetical protein.
  
     0.567
SHG64293.1
Protein of unknown function.
  
     0.563
SHF93913.1
Lysylphosphatidylglycerol synthase TM region.
  
     0.561
SHH03754.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.551
Your Current Organism:
Flavobacterium micromati
NCBI taxonomy Id: 229205
Other names: CIP 108161, DSM 17659, F. micromati, Flavobacterium micromati Van Trappen et al. 2004, LMG 21919, LMG:21919
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.