Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACN38_g12570Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (521 aa)    
Predicted Functional Partners:
ACN38_g9625
SANT domain-containing protein.
    
 0.993
ACN38_g6577
Hist_deacetyl domain-containing protein.
  
 
0.989
ACN38_g7287
Histone H2A; Belongs to the histone H2A family.
   
 0.983
ACN38_g743
SET domain-containing protein.
    
 0.978
ACN38_g8404
LisH domain-containing protein.
   
 0.971
ACN38_g8537
Uncharacterized protein.
   
 0.970
ACN38_g5631
Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily.
   
 0.966
ACN38_g765
WD_REPEATS_REGION domain-containing protein.
   
 0.964
ACN38_g9678
Uncharacterized protein.
   
 0.950
ACN38_g1381
FAS1 domain-containing protein.
   
 0.950
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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