ACN38_g10226 protein (Penicillium nordicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ACN38_g10226

WD_REPEATS_REGION domain-containing protein. (709 aa)

Predicted Functional Partners:

ACN38_g10810

0.994

ACN38_g6597

0.994

ACN38_g5603

0.986

ACN38_g5016

0.973

ACN38_g5017

0.973

ACN38_g7610

0.955

ACN38_g8894

0.940

ACN38_g1511

0.933

ACN38_g1350

0.923

ACN38_g1095

0.923

Your Current Organism:

Penicillium nordicum

NCBI taxonomy Id: 229535
Other names: P. nordicum

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACN38_g10226	ACN38_g10810	A0A0M8NWS2	A0A0M8P1A3	WD_REPEATS_REGION domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.994
ACN38_g10226	ACN38_g1095	A0A0M8NWS2	A0A0M9WK71	WD_REPEATS_REGION domain-containing protein.	PCI domain-containing protein.	0.923
ACN38_g10226	ACN38_g1350	A0A0M8NWS2	A0A0M8P969	WD_REPEATS_REGION domain-containing protein.	PCI domain-containing protein.	0.923
ACN38_g10226	ACN38_g1511	A0A0M8NWS2	A0A0M8PH21	WD_REPEATS_REGION domain-containing protein.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.933
ACN38_g10226	ACN38_g5016	A0A0M8NWS2	A0A0M8PAF4	WD_REPEATS_REGION domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.973
ACN38_g10226	ACN38_g5017	A0A0M8NWS2	A0A0M9WGK0	WD_REPEATS_REGION domain-containing protein.	Vezatin domain-containing protein.	0.973
ACN38_g10226	ACN38_g5603	A0A0M8NWS2	A0A0M9WG21	WD_REPEATS_REGION domain-containing protein.	RING-type domain-containing protein.	0.986
ACN38_g10226	ACN38_g6597	A0A0M8NWS2	A0A0M9WF81	WD_REPEATS_REGION domain-containing protein.	CPSF_A domain-containing protein.	0.994
ACN38_g10226	ACN38_g7610	A0A0M8NWS2	A0A0M8NYL3	WD_REPEATS_REGION domain-containing protein.	MPN domain-containing protein.	0.955
ACN38_g10226	ACN38_g8894	A0A0M8NWS2	A0A0M9WD22	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.940
ACN38_g10810	ACN38_g10226	A0A0M8P1A3	A0A0M8NWS2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	WD_REPEATS_REGION domain-containing protein.	0.994
ACN38_g10810	ACN38_g1095	A0A0M8P1A3	A0A0M9WK71	CULLIN_2 domain-containing protein; Belongs to the cullin family.	PCI domain-containing protein.	0.973
ACN38_g10810	ACN38_g1350	A0A0M8P1A3	A0A0M8P969	CULLIN_2 domain-containing protein; Belongs to the cullin family.	PCI domain-containing protein.	0.979
ACN38_g10810	ACN38_g1511	A0A0M8P1A3	A0A0M8PH21	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.664
ACN38_g10810	ACN38_g5016	A0A0M8P1A3	A0A0M8PAF4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.931
ACN38_g10810	ACN38_g5017	A0A0M8P1A3	A0A0M9WGK0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Vezatin domain-containing protein.	0.931
ACN38_g10810	ACN38_g5603	A0A0M8P1A3	A0A0M9WG21	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.994
ACN38_g10810	ACN38_g6597	A0A0M8P1A3	A0A0M9WF81	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CPSF_A domain-containing protein.	0.997
ACN38_g10810	ACN38_g7610	A0A0M8P1A3	A0A0M8NYL3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	MPN domain-containing protein.	0.975
ACN38_g1095	ACN38_g10226	A0A0M9WK71	A0A0M8NWS2	PCI domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.923