Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACN38_g9118RRM domain-containing protein. (137 aa)    
Predicted Functional Partners:
ACN38_g648
Uncharacterized protein.
    
 0.777
ACN38_g5476
Uncharacterized protein.
 
 
   0.760
ACN38_g7590
RRM domain-containing protein.
  
 
0.747
ACN38_g11160
Uncharacterized protein.
    
 0.738
ACN38_g10263
Uncharacterized protein.
    
 0.738
ACN38_g9483
Uncharacterized protein.
    
 0.703
tif1
ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family.
    
 0.693
ACN38_g10636
Nuclear cap-binding protein subunit 2.
    
 0.672
ACN38_g9533
Uncharacterized protein.
    
 0.669
ACN38_g6239
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.668
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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