ACN38_g9721 protein (Penicillium nordicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ACN38_g9721

Uncharacterized protein. (470 aa)

Predicted Functional Partners:

ACN38_g5346

0.852

ACN38_g4602

0.734

ACN38_g822

0.663

ACN38_g789

0.663

ACN38_g275

0.656

ACN38_g10152

0.607

ACN38_g8492

0.575

TIF34

0.571

ACN38_g11516

0.563

ACN38_g3265

0.544

Your Current Organism:

Penicillium nordicum

NCBI taxonomy Id: 229535
Other names: P. nordicum

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACN38_g10152	ACN38_g11516	A0A0M8NUH1	A0A0M8P029	Uncharacterized protein.	PAT1 domain-containing protein.	0.923
ACN38_g10152	ACN38_g3265	A0A0M8NUH1	A0A0M8PE18	Uncharacterized protein.	Uncharacterized protein.	0.994
ACN38_g10152	ACN38_g5346	A0A0M8NUH1	A0A0M8P1V1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.986
ACN38_g10152	ACN38_g9721	A0A0M8NUH1	A0A0M8P357	Uncharacterized protein.	Uncharacterized protein.	0.607
ACN38_g11516	ACN38_g10152	A0A0M8P029	A0A0M8NUH1	PAT1 domain-containing protein.	Uncharacterized protein.	0.923
ACN38_g11516	ACN38_g3265	A0A0M8P029	A0A0M8PE18	PAT1 domain-containing protein.	Uncharacterized protein.	0.939
ACN38_g11516	ACN38_g5346	A0A0M8P029	A0A0M8P1V1	PAT1 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.991
ACN38_g11516	ACN38_g9721	A0A0M8P029	A0A0M8P357	PAT1 domain-containing protein.	Uncharacterized protein.	0.563
ACN38_g275	ACN38_g8492	A0A0M8PJ49	A0A0M9WDE2	Uncharacterized protein.	Uncharacterized protein.	0.985
ACN38_g275	ACN38_g9721	A0A0M8PJ49	A0A0M8P357	Uncharacterized protein.	Uncharacterized protein.	0.656
ACN38_g3265	ACN38_g10152	A0A0M8PE18	A0A0M8NUH1	Uncharacterized protein.	Uncharacterized protein.	0.994
ACN38_g3265	ACN38_g11516	A0A0M8PE18	A0A0M8P029	Uncharacterized protein.	PAT1 domain-containing protein.	0.939
ACN38_g3265	ACN38_g5346	A0A0M8PE18	A0A0M8P1V1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.985
ACN38_g3265	ACN38_g9721	A0A0M8PE18	A0A0M8P357	Uncharacterized protein.	Uncharacterized protein.	0.544
ACN38_g4602	ACN38_g789	A0A0M8P3P7	A0A0M9WKF7	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.797
ACN38_g4602	ACN38_g822	A0A0M8P3P7	A0A0M9WKE0	RING-type domain-containing protein.	Telo_bind domain-containing protein.	0.698
ACN38_g4602	ACN38_g9721	A0A0M8P3P7	A0A0M8P357	RING-type domain-containing protein.	Uncharacterized protein.	0.734
ACN38_g4602	TIF34	A0A0M8P3P7	A0A0M8NXE5	RING-type domain-containing protein.	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.484
ACN38_g5346	ACN38_g10152	A0A0M8P1V1	A0A0M8NUH1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.986
ACN38_g5346	ACN38_g11516	A0A0M8P1V1	A0A0M8P029	Uncharacterized protein; Belongs to the DEAD box helicase family.	PAT1 domain-containing protein.	0.991