Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACN38_g3088Malate dehydrogenase. (340 aa)    
Predicted Functional Partners:
ACN38_g8712
Aspartate aminotransferase.
   
 0.992
ACN38_g11620
Citrate synthase; Belongs to the citrate synthase family.
  
 0.989
ACN38_g6276
Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.
  
 0.989
ACN38_g371
Citrate synthase; Belongs to the citrate synthase family.
  
 0.989
ACN38_g8338
Uncharacterized protein.
  
 0.984
ACN38_g482
Aminotran_1_2 domain-containing protein.
   
 0.977
ACN38_g1386
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.966
ACN38_g6824
Aminotran_1_2 domain-containing protein.
   
 0.965
ACN38_g8336
Aspartate aminotransferase.
   
 0.965
ACN38_g1955
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
   
 0.964
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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