Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACN38_g7084Uncharacterized protein. (454 aa)    
Predicted Functional Partners:
ACN38_g10545
SF3b1 domain-containing protein.
    
 0.621
ACN38_g8603
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 0.616
ACN38_g5452
Uncharacterized protein.
    
 
 0.616
ACN38_g5080
Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.
      
 0.614
ACN38_g12366
PSP domain-containing protein.
    
 0.610
tif1
ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family.
    
 0.609
ACN38_g10636
Nuclear cap-binding protein subunit 2.
    
 0.605
ACN38_g9483
Uncharacterized protein.
    
 0.600
ACN38_g9462
Uncharacterized protein.
    
  0.599
ACN38_g4272
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.598
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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