Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACN38_g2392UBD domain-containing protein. (384 aa)    
Predicted Functional Partners:
ACN38_g11089
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 
 0.583
ubc4
Ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.583
ACN38_g2391
G-patch domain-containing protein.
 
      0.539
ACN38_g8342
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.496
ACN38_g6241
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.491
ACN38_g7276
Uncharacterized protein.
    
 
 0.482
ACN38_g2866
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
    
 
 0.476
ACN38_g11660
Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.
    
   0.463
ACN38_g13
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 
 0.443
ACN38_g4037
OTU domain-containing protein.
    
 
 0.431
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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