Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACN38_g6699HTH araC/xylS-type domain-containing protein. (244 aa)    
Predicted Functional Partners:
ACN38_g8906
Uncharacterized protein.
    
 0.689
ACN38_g3620
HMG box domain-containing protein.
    
 0.689
ACN38_g6535
HMG box domain-containing protein.
    
 0.689
ACN38_g8231
Uncharacterized protein.
    
  0.628
ACN38_g8686
Uncharacterized protein.
    
 0.540
ACN38_g9678
Uncharacterized protein.
    
 
 0.514
tbp1
TATA-box-binding protein.
    
 0.508
ACN38_g11725
CP2 domain-containing protein.
    
 
 0.507
ACN38_g1137
Uncharacterized protein.
    
  0.484
ACN38_g3928
HTH TFE/IIEalpha-type domain-containing protein.
    
  0.464
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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