Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACN38_g5064CUE domain-containing protein. (415 aa)    
Predicted Functional Partners:
ACN38_g9090
CSN8_PSD8_EIF3K domain-containing protein.
    
  0.905
ACN38_g8220
Autophagy-related protein.
    
 
 0.838
ACN38_g6994
DUF2428 domain-containing protein.
    
   0.794
ACN38_g12829
AN1-type domain-containing protein.
    
  0.678
ubi1
Polyubiquitin.
    
  0.678
ACN38_g5103
E3 ubiquitin-protein ligase.
    
 0.617
ACN38_g4258
VWFA domain-containing protein.
    
 0.602
ACN38_g8740
SH3 domain-containing protein.
   
   0.599
ACN38_g7489
Ysc84 domain-containing protein.
   
   0.599
ACN38_g5772
Ysc84 domain-containing protein.
   
   0.599
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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