Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACN38_g2510RWD domain-containing protein. (229 aa)    
Predicted Functional Partners:
ACN38_g4399
OBG-type G domain-containing protein.
   
 0.997
ACN38_g121
OBG-type G domain-containing protein.
   
 0.988
ACN38_g6403
Uncharacterized protein.
    
 
 0.982
ACN38_g7104
NUC153 domain-containing protein.
   
   0.916
ACN38_g5137
Translation machinery-associated protein 22.
   
    0.876
ACN38_g2531
Uncharacterized protein.
   
 
 0.871
ACN38_g370
Uncharacterized protein.
   
 
 0.867
ACN38_g7853
Uncharacterized protein.
   
 
 0.854
ACN38_g2400
MAP kinase kinase kinase.
    
   0.798
ACN38_g11257
RWD domain-containing protein.
    
 
 0.770
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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