Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACN38_g390RING-type domain-containing protein. (180 aa)    
Predicted Functional Partners:
ACN38_g4872
P/Homo B domain-containing protein; Belongs to the peptidase S8 family.
    
  0.835
ACN38_g10942
Ubiquitin-like domain-containing protein.
    
 0.712
ACN38_g10943
RRN7-type domain-containing protein.
    
 0.712
ACN38_g5934
Uncharacterized protein.
    
  0.693
ACN38_g12829
AN1-type domain-containing protein.
    
 0.666
ubi1
Polyubiquitin.
    
 0.666
ACN38_g11136
Uncharacterized protein.
     
  0.618
ACN38_g10137
Uncharacterized protein.
     
  0.615
ACN38_g11325
Uncharacterized protein; Belongs to the AAA ATPase family.
     
  0.615
ACN38_g11089
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.595
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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