Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACN38_g3816Uncharacterized protein. (546 aa)    
Predicted Functional Partners:
ACN38_g6800
Uncharacterized protein.
   
 0.987
ACN38_g7015
WD_REPEATS_REGION domain-containing protein.
    
  0.951
ACN38_g598
Uncharacterized protein.
   
 
 0.941
ACN38_g10545
SF3b1 domain-containing protein.
   
 
 0.935
bbp1
Branchpoint-bridging protein.
   
 0.918
ACN38_g4327
C2H2-type domain-containing protein.
   
  0.915
ACN38_g5578
Uncharacterized protein.
    
 0.906
ACN38_g9366
Uncharacterized protein.
    
 
 0.880
ACN38_g6591
J domain-containing protein.
   
  0.864
fal1
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
    
  0.864
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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