Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACN38_g4325Uncharacterized protein. (360 aa)    
Predicted Functional Partners:
ACN38_g9472
CBFD_NFYB_HMF domain-containing protein.
    
 0.997
ACN38_g11461
CBFD_NFYB_HMF domain-containing protein.
   
 0.988
ACN38_g884
CBFD_NFYB_HMF domain-containing protein.
   
 0.988
ACN38_g7477
CBFD_NFYB_HMF domain-containing protein.
    
 0.973
tbp1
TATA-box-binding protein.
    
 0.903
ACN38_g7226
BZIP domain-containing protein.
    
 
 0.900
ACN38_g1137
Uncharacterized protein.
    
 0.858
ACN38_g8789
PH domain-containing protein.
     
 0.800
srep
GATA factor.
    
 
 0.788
nrfA
Nitrogen regulatory protein nrfA.
    
 
 0.758
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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