Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACN38_g3071RECA_2 domain-containing protein. (85 aa)    
Predicted Functional Partners:
ACN38_g2430
RECA_2 domain-containing protein.
   
 0.990
ACN38_g4225
DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.
   
 0.989
ACN38_g1821
Rad51 domain-containing protein.
   
 0.986
ACN38_g1404
Uncharacterized protein.
    
 0.981
ACN38_g11124
Uncharacterized protein.
  
 
 0.978
ACN38_g1497
3'-5' exonuclease domain-containing protein.
   
 0.976
fen1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
  
 0.974
ACN38_g4047
DNA polymerase.
  
 0.967
ACN38_g4435
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 0.954
ACN38_g10261
Uncharacterized protein.
   
 0.954
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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