Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACN38_g596Exonuclease domain-containing protein. (293 aa)    
Predicted Functional Partners:
ACN38_g2748
RRM domain-containing protein.
   
 0.966
ACN38_g2922
CBF domain-containing protein.
   
 
 0.962
ACN38_g8084
Uncharacterized protein.
   
   0.961
ACN38_g6239
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
  0.957
ACN38_g10124
Brix domain-containing protein.
   
   0.939
ACN38_g563
Uncharacterized protein.
   
   0.939
ACN38_g2734
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.929
ACN38_g7778
SRP40_C domain-containing protein.
   
   0.929
ACN38_g2128
Uncharacterized protein.
   
  0.915
ACN38_g9742
Uncharacterized protein.
   
   0.913
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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