Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACN38_g201DNA ligase. (1049 aa)    
Predicted Functional Partners:
ACN38_g8842
SAP domain-containing protein.
  
 0.992
ACN38_g83
ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.
   
 0.990
ACN38_g1404
Uncharacterized protein.
    
 
 0.983
ACN38_g2855
DNA_LIGASE_A3 domain-containing protein.
   
 0.982
ACN38_g10043
Uncharacterized protein.
   
 0.972
ACN38_g6371
BRCT domain-containing protein.
   
 0.951
ACN38_g2854
Uncharacterized protein.
     
 0.925
ACN38_g7970
Uncharacterized protein.
   
 0.885
ACN38_g950
POLXc domain-containing protein.
   
 0.879
ACN38_g10391
AAA_23 domain-containing protein.
    
 0.874
Your Current Organism:
Penicillium nordicum
NCBI taxonomy Id: 229535
Other names: P. nordicum
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