ACN38_g3374 protein (Penicillium nordicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ACN38_g3374

Mago-bind domain-containing protein. (218 aa)

Predicted Functional Partners:

ACN38_g2398

0.981

ACN38_g6560

0.961

fal1

0.926

ACN38_g10821

0.840

ACN38_g5914

0.802

ACN38_g5143

0.565

ACN38_g10636

0.516

ACN38_g12904

0.505

ACN38_g11935

0.487

ACN38_g4778

0.487

Your Current Organism:

Penicillium nordicum

NCBI taxonomy Id: 229535
Other names: P. nordicum

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACN38_g10636	ACN38_g10821	A0A0M9WBU2	A0A0M9WBM9	Nuclear cap-binding protein subunit 2.	RRM domain-containing protein.	0.864
ACN38_g10636	ACN38_g12904	A0A0M9WBU2	A0A0M9W9H9	Nuclear cap-binding protein subunit 2.	Helicase ATP-binding domain-containing protein.	0.966
ACN38_g10636	ACN38_g2398	A0A0M9WBU2	A0A0M8P7C9	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.871
ACN38_g10636	ACN38_g3374	A0A0M9WBU2	A0A0M8PDT7	Nuclear cap-binding protein subunit 2.	Mago-bind domain-containing protein.	0.516
ACN38_g10636	ACN38_g5914	A0A0M9WBU2	A0A0M8P1G5	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.849
ACN38_g10636	ACN38_g6560	A0A0M9WBU2	A0A0M8P6W9	Nuclear cap-binding protein subunit 2.	RRM domain-containing protein.	0.969
ACN38_g10636	fal1	A0A0M9WBU2	A0A0M9WIJ9	Nuclear cap-binding protein subunit 2.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.973
ACN38_g10821	ACN38_g10636	A0A0M9WBM9	A0A0M9WBU2	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.864
ACN38_g10821	ACN38_g12904	A0A0M9WBM9	A0A0M9W9H9	RRM domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.998
ACN38_g10821	ACN38_g2398	A0A0M9WBM9	A0A0M8P7C9	RRM domain-containing protein.	Uncharacterized protein.	0.972
ACN38_g10821	ACN38_g3374	A0A0M9WBM9	A0A0M8PDT7	RRM domain-containing protein.	Mago-bind domain-containing protein.	0.840
ACN38_g10821	ACN38_g5914	A0A0M9WBM9	A0A0M8P1G5	RRM domain-containing protein.	Uncharacterized protein.	0.998
ACN38_g10821	ACN38_g6560	A0A0M9WBM9	A0A0M8P6W9	RRM domain-containing protein.	RRM domain-containing protein.	0.977
ACN38_g10821	fal1	A0A0M9WBM9	A0A0M9WIJ9	RRM domain-containing protein.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.978
ACN38_g11935	ACN38_g3374	A0A0M8NRJ6	A0A0M8PDT7	PKS_ER domain-containing protein.	Mago-bind domain-containing protein.	0.487
ACN38_g12904	ACN38_g10636	A0A0M9W9H9	A0A0M9WBU2	Helicase ATP-binding domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.966
ACN38_g12904	ACN38_g10821	A0A0M9W9H9	A0A0M9WBM9	Helicase ATP-binding domain-containing protein.	RRM domain-containing protein.	0.998
ACN38_g12904	ACN38_g2398	A0A0M9W9H9	A0A0M8P7C9	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.909
ACN38_g12904	ACN38_g3374	A0A0M9W9H9	A0A0M8PDT7	Helicase ATP-binding domain-containing protein.	Mago-bind domain-containing protein.	0.505
ACN38_g12904	ACN38_g5914	A0A0M9W9H9	A0A0M8P1G5	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.998