ACN38_g5867 protein (Penicillium nordicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACN38_g5867

LRRcap domain-containing protein. (141 aa)

Predicted Functional Partners:

dis2

0.957

ACN38_g5866

0.935

ACN38_g7368

0.897

ACN38_g3751

0.897

ACN38_g9074

0.896

ACN38_g238

0.867

ACN38_g10807

0.835

ACN38_g4824

0.832

ACN38_g4272

0.825

ACN38_g7665

0.810

Your Current Organism:

Penicillium nordicum

NCBI taxonomy Id: 229535
Other names: P. nordicum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACN38_g10807	ACN38_g4272	A0A0M9WBD0	A0A0M8PBP9	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
ACN38_g10807	ACN38_g4824	A0A0M9WBD0	A0A0M8P3C0	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
ACN38_g10807	ACN38_g5866	A0A0M9WBD0	A0A0M8P0Y0	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.835
ACN38_g10807	ACN38_g5867	A0A0M9WBD0	A0A0N0RYV7	Small nuclear ribonucleoprotein Sm D2.	LRRcap domain-containing protein.	0.835
ACN38_g10807	ACN38_g7665	A0A0M9WBD0	A0A0M8NYJ6	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
ACN38_g238	ACN38_g5866	A0A0M8PIA2	A0A0M8P0Y0	Uncharacterized protein.	Uncharacterized protein.	0.867
ACN38_g238	ACN38_g5867	A0A0M8PIA2	A0A0N0RYV7	Uncharacterized protein.	LRRcap domain-containing protein.	0.867
ACN38_g3751	ACN38_g5866	A0A0M8PCI6	A0A0M8P0Y0	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.897
ACN38_g3751	ACN38_g5867	A0A0M8PCI6	A0A0N0RYV7	Serine/threonine-protein phosphatase.	LRRcap domain-containing protein.	0.897
ACN38_g3751	ACN38_g9074	A0A0M8PCI6	A0A0M8P2P4	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.863
ACN38_g3751	dis2	A0A0M8PCI6	A0A0M8P2X8	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.895
ACN38_g4272	ACN38_g10807	A0A0M8PBP9	A0A0M9WBD0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D2.	0.999
ACN38_g4272	ACN38_g4824	A0A0M8PBP9	A0A0M8P3C0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D3.	0.999
ACN38_g4272	ACN38_g5866	A0A0M8PBP9	A0A0M8P0Y0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Uncharacterized protein.	0.825
ACN38_g4272	ACN38_g5867	A0A0M8PBP9	A0A0N0RYV7	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	LRRcap domain-containing protein.	0.825
ACN38_g4272	ACN38_g7665	A0A0M8PBP9	A0A0M8NYJ6	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
ACN38_g4824	ACN38_g10807	A0A0M8P3C0	A0A0M9WBD0	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D2.	0.999
ACN38_g4824	ACN38_g4272	A0A0M8P3C0	A0A0M8PBP9	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
ACN38_g4824	ACN38_g5866	A0A0M8P3C0	A0A0M8P0Y0	Small nuclear ribonucleoprotein Sm D3.	Uncharacterized protein.	0.832
ACN38_g4824	ACN38_g5867	A0A0M8P3C0	A0A0N0RYV7	Small nuclear ribonucleoprotein Sm D3.	LRRcap domain-containing protein.	0.832