STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001050195_01450Unannotated protein. (945 aa)    
Predicted Functional Partners:
DEQ80_09620
Unannotated protein.
  
 
 0.934
GCA_001050195_01246
Unannotated protein.
  
  
  0.816
DEQ80_00115
Unannotated protein.
 
  
  0.795
GCA_001050195_02815
Unannotated protein.
    
 0.790
DEQ80_07810
Unannotated protein.
   
    0.772
GCA_001050195_01451
Unannotated protein.
 
     0.766
GCA_001050195_01677
Unannotated protein.
  
   0.756
DEQ80_00220
Unannotated protein.
  
   0.756
GCA_001050195_00789
Unannotated protein.
 
  
  0.743
rpoA
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.721
Your Current Organism:
Anaerolinea thermolimosa
NCBI taxonomy Id: 229919
Other names: A. thermolimosa, Anaerolinea thermolimosa Yamada et al. 2006, DSM 16554, JCM 12577, anaerobic filamentous bacterium IMO-1, strain IMO-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.