STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001050195_01720Unannotated protein. (249 aa)    
Predicted Functional Partners:
GCA_001050195_00779
Unannotated protein.
 
 0.996
DEQ80_05775
Unannotated protein.
 
  0.982
DEQ80_05835
Unannotated protein.
 
  0.981
GCA_001050195_01675
Unannotated protein.
 
  0.979
DEQ80_01630
Unannotated protein.
 
 0.948
DEQ80_07035
Unannotated protein.
 
  0.913
DEQ80_05525
Unannotated protein; Belongs to the ABC transporter superfamily.
 
     
0.899
DEQ80_08680
Unannotated protein; Belongs to the ABC transporter superfamily.
 
    
0.882
DEQ80_01970
Unannotated protein; Belongs to the ABC transporter superfamily.
 
     
0.877
DEQ80_07030
Unannotated protein.
  
 
 0.867
Your Current Organism:
Anaerolinea thermolimosa
NCBI taxonomy Id: 229919
Other names: A. thermolimosa, Anaerolinea thermolimosa Yamada et al. 2006, DSM 16554, JCM 12577, anaerobic filamentous bacterium IMO-1, strain IMO-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.